Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
PKNOX1P55347 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 NKAPP1-205ENST00000585790 367 ntBASIC16.4■□□□□ 0.22
PKNOX1P55347 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
PKNOX1P55347 AC064862.7-201ENST00000604520 867 ntBASIC16.4■□□□□ 0.22
PKNOX1P55347 AL139424.1-201ENST00000607572 797 ntBASIC16.4■□□□□ 0.22
PKNOX1P55347 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.4■□□□□ 0.22
PKNOX1P55347 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PKNOX1P55347 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PKNOX1P55347 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKNOX1P55347 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PKNOX1P55347 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
PKNOX1P55347 TOP3BP1-201ENST00000420768 1380 ntBASIC16.39■□□□□ 0.21
PKNOX1P55347 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 AC092850.2-201ENST00000623821 2697 ntBASIC16.39■□□□□ 0.21
PKNOX1P55347 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.39■□□□□ 0.21
PKNOX1P55347 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.39■□□□□ 0.21
PKNOX1P55347 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PKNOX1P55347 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PKNOX1P55347 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
PKNOX1P55347 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.39■□□□□ 0.21
PKNOX1P55347 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKNOX1P55347 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms