Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH6P55285 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH6P55285 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH6P55285 AC018695.7-201ENST00000624587 2492 ntBASIC17.36■□□□□ 0.37
CDH6P55285 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH6P55285 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.35■□□□□ 0.37
CDH6P55285 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.35■□□□□ 0.37
CDH6P55285 FAM185BP-201ENST00000443595 716 ntBASIC17.35■□□□□ 0.37
CDH6P55285 AC009947.1-201ENST00000444350 727 ntBASIC17.35■□□□□ 0.37
CDH6P55285 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 ACTL9-202ENST00000612068 1252 ntBASIC17.35■□□□□ 0.37
CDH6P55285 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 GGT4P-201ENST00000623672 1708 ntBASIC17.35■□□□□ 0.37
CDH6P55285 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.35■□□□□ 0.37
CDH6P55285 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CDH6P55285 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH6P55285 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH6P55285 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CDH6P55285 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 CXCL1P1-201ENST00000502804 216 ntBASIC17.34■□□□□ 0.37
CDH6P55285 RNA5SP415-201ENST00000517246 115 ntBASIC17.34■□□□□ 0.37
CDH6P55285 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 AC012569.1-201ENST00000591191 1524 ntBASIC17.34■□□□□ 0.37
CDH6P55285 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDH6P55285 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
CDH6P55285 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH6P55285 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.33■□□□□ 0.37
CDH6P55285 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CDH6P55285 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
CDH6P55285 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.33■□□□□ 0.37
CDH6P55285 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.33■□□□□ 0.37
CDH6P55285 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CDH6P55285 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.33■□□□□ 0.37
CDH6P55285 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH6P55285 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CDH6P55285 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH6P55285 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH6P55285 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms