Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 ST20-AS1-201ENST00000560255 4223 ntBASIC12.32□□□□□ -0.44
CKS2P33552 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.32□□□□□ -0.44
CKS2P33552 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
CKS2P33552 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CKS2P33552 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CKS2P33552 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
CKS2P33552 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CKS2P33552 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CKS2P33552 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CKS2P33552 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.31□□□□□ -0.44
CKS2P33552 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.31□□□□□ -0.44
CKS2P33552 UBE2SP1-201ENST00000450587 669 ntBASIC12.31□□□□□ -0.44
CKS2P33552 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 AC107956.1-201ENST00000494359 873 ntBASIC12.31□□□□□ -0.44
CKS2P33552 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.31□□□□□ -0.44
CKS2P33552 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC12.31□□□□□ -0.44
CKS2P33552 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC12.31□□□□□ -0.44
CKS2P33552 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 AC113410.3-201ENST00000623366 203 ntBASIC12.31□□□□□ -0.44
CKS2P33552 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CKS2P33552 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 AC006058.4-201ENST00000624016 1670 ntBASIC12.31□□□□□ -0.44
CKS2P33552 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CKS2P33552 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.31□□□□□ -0.44
CKS2P33552 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CKS2P33552 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.31□□□□□ -0.44
CKS2P33552 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CKS2P33552 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS2P33552 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CKS2P33552 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS2P33552 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CKS2P33552 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 AC126335.2-201ENST00000623362 4637 ntBASIC12.3□□□□□ -0.44
CKS2P33552 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS2P33552 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS2P33552 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CKS2P33552 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS2P33552 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms