Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
APOEP02649 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.48■□□□□ 0.39
APOEP02649 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.48■□□□□ 0.39
APOEP02649 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 SLC22A20-204ENST00000530038 1673 ntBASIC17.48■□□□□ 0.39
APOEP02649 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
APOEP02649 RNF216P1-203ENST00000404404 2427 ntBASIC17.48■□□□□ 0.39
APOEP02649 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOEP02649 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.48■□□□□ 0.39
APOEP02649 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
APOEP02649 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.47■□□□□ 0.39
APOEP02649 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.47■□□□□ 0.39
APOEP02649 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.47■□□□□ 0.39
APOEP02649 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
APOEP02649 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.47■□□□□ 0.39
APOEP02649 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.47■□□□□ 0.39
APOEP02649 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.47■□□□□ 0.39
APOEP02649 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.47■□□□□ 0.39
APOEP02649 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
APOEP02649 AC078925.2-201ENST00000624013 1973 ntBASIC17.47■□□□□ 0.39
APOEP02649 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
APOEP02649 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
APOEP02649 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOEP02649 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
APOEP02649 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.46■□□□□ 0.39
APOEP02649 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.46■□□□□ 0.39
APOEP02649 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
APOEP02649 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
APOEP02649 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
APOEP02649 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.46■□□□□ 0.39
APOEP02649 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.46■□□□□ 0.39
APOEP02649 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.46■□□□□ 0.39
APOEP02649 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.46■□□□□ 0.39
APOEP02649 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
APOEP02649 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.46■□□□□ 0.39
APOEP02649 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.46■□□□□ 0.39
APOEP02649 MIR3687-2-201ENST00000577708 61 ntBASIC17.46■□□□□ 0.39
APOEP02649 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.46■□□□□ 0.39
APOEP02649 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.46■□□□□ 0.39
APOEP02649 MIR3687-1-201ENST00000614492 61 ntBASIC17.46■□□□□ 0.39
APOEP02649 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.46■□□□□ 0.39
APOEP02649 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.46■□□□□ 0.39
APOEP02649 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
APOEP02649 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
APOEP02649 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 PCDHB17P-201ENST00000539533 2393 ntBASIC17.45■□□□□ 0.38
APOEP02649 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
APOEP02649 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms