Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 AC012569.1-201ENST00000591191 1524 ntBASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3BPQ9Y5P4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 HMGA1P7-201ENST00000406908 502 ntBASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AC087641.1-201ENST00000557561 1021 ntBASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AL596442.2-201ENST00000610240 980 ntBASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AP001350.2-201ENST00000625104 1094 ntBASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.64■□□□□ 0.57
COL4A3BPQ9Y5P4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 AC002056.1-201ENST00000395613 760 ntBASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 AC254562.1-201ENST00000417586 456 ntBASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3BPQ9Y5P4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 HLA-J-202ENST00000469281 1241 ntBASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SNHG9-202ENST00000564014 471 ntBASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 CYP2A7P1-201ENST00000595391 815 ntBASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms