Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTHRC1Q96CG8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CTHRC1Q96CG8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CTHRC1Q96CG8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CTHRC1Q96CG8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 YBX2P1-201ENST00000394192 760 ntBASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 ADH5P3-201ENST00000433842 1137 ntBASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 FAM58CP-201ENST00000435741 640 ntBASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.4■□□□□ 0.06
CTHRC1Q96CG8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.39■□□□□ 0.06
CTHRC1Q96CG8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 MKNK2P1-201ENST00000437526 628 ntBASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 RARRES2P8-201ENST00000566335 367 ntBASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AKAP8P1-201ENST00000434743 1349 ntBASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.39■□□□□ 0.05
CTHRC1Q96CG8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.38■□□□□ 0.05
CTHRC1Q96CG8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms