Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 LINC01711-201ENST00000598340 967 ntBASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PPP4R4Q6NUP7 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 ALOX12P2-203ENST00000570921 1945 ntBASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 AC112698.1-201ENST00000510299 916 ntBASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PPP4R4Q6NUP7 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms