Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.72□□□□□ -0.05
CX3CR1P49238 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.72□□□□□ -0.05
CX3CR1P49238 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.72□□□□□ -0.05
CX3CR1P49238 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.72□□□□□ -0.05
CX3CR1P49238 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC068587.6-202ENST00000641839 5619 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AF238378.1-201ENST00000526806 358 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.71□□□□□ -0.05
CX3CR1P49238 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.71□□□□□ -0.05
CX3CR1P49238 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC006557.2-201ENST00000592985 1240 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 AF228730.7-201ENST00000641842 219 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 AC006504.4-201ENST00000592118 1568 ntBASIC14.71□□□□□ -0.05
CX3CR1P49238 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
CX3CR1P49238 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CX3CR1P49238 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.71□□□□□ -0.06
CX3CR1P49238 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.71□□□□□ -0.06
CX3CR1P49238 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CX3CR1P49238 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CX3CR1P49238 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CX3CR1P49238 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.7□□□□□ -0.06
CX3CR1P49238 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.7□□□□□ -0.06
CX3CR1P49238 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.7□□□□□ -0.06
CX3CR1P49238 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CX3CR1P49238 AL805961.1-202ENST00000641562 540 ntBASIC14.7□□□□□ -0.06
CX3CR1P49238 AL139011.1-202ENST00000642063 584 ntBASIC14.7□□□□□ -0.06
CX3CR1P49238 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 AC002310.6-201ENST00000624451 1377 ntBASIC14.7□□□□□ -0.06
CX3CR1P49238 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.7□□□□□ -0.06
CX3CR1P49238 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CR1P49238 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms