Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 RNF216P1-203ENST00000404404 2427 ntBASIC17.18■□□□□ 0.34
HMGA1P17096 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGA1P17096 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HMGA1P17096 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGA1P17096 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGA1P17096 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGA1P17096 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGA1P17096 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 AC105021.1-202ENST00000570572 669 ntBASIC17.17■□□□□ 0.34
HMGA1P17096 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.17■□□□□ 0.34
HMGA1P17096 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGA1P17096 AL133215.2-201ENST00000609242 977 ntBASIC17.17■□□□□ 0.34
HMGA1P17096 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.17■□□□□ 0.34
HMGA1P17096 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGA1P17096 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGA1P17096 HTR7P1-202ENST00000624664 4411 ntBASIC17.16■□□□□ 0.34
HMGA1P17096 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HMGA1P17096 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HMGA1P17096 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGA1P17096 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.16■□□□□ 0.34
HMGA1P17096 FAM207CP-201ENST00000443486 507 ntBASIC17.16■□□□□ 0.34
HMGA1P17096 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.16■□□□□ 0.34
HMGA1P17096 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.16■□□□□ 0.34
HMGA1P17096 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.16■□□□□ 0.34
HMGA1P17096 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.16■□□□□ 0.34
HMGA1P17096 LINC02560-201ENST00000596379 459 ntBASIC17.16■□□□□ 0.34
HMGA1P17096 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 AC078925.2-201ENST00000624013 1973 ntBASIC17.16■□□□□ 0.34
HMGA1P17096 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 LETM1P2-201ENST00000597330 2178 ntBASIC17.16■□□□□ 0.34
HMGA1P17096 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGA1P17096 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGA1P17096 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGA1P17096 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGA1P17096 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
HMGA1P17096 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 RPL37AP1-201ENST00000412502 279 ntBASIC17.15■□□□□ 0.34
HMGA1P17096 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HMGA1P17096 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGA1P17096 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.15■□□□□ 0.34
HMGA1P17096 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms