Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TNFP01375 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 BASP1P1-201ENST00000430708 665 ntBASIC16.24■□□□□ 0.19
TNFP01375 BCRP1-201ENST00000444246 691 ntBASIC16.24■□□□□ 0.19
TNFP01375 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.24■□□□□ 0.19
TNFP01375 RARRES2P9-201ENST00000565168 469 ntBASIC16.24■□□□□ 0.19
TNFP01375 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TNFP01375 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.24■□□□□ 0.19
TNFP01375 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TNFP01375 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
TNFP01375 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.23■□□□□ 0.19
TNFP01375 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.23■□□□□ 0.19
TNFP01375 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.23■□□□□ 0.19
TNFP01375 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.23■□□□□ 0.19
TNFP01375 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
TNFP01375 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.23■□□□□ 0.19
TNFP01375 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.23■□□□□ 0.19
TNFP01375 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TNFP01375 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.23■□□□□ 0.19
TNFP01375 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.23■□□□□ 0.19
TNFP01375 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TNFP01375 IGHV3-42-201ENST00000520410 361 ntBASIC16.23■□□□□ 0.19
TNFP01375 AC069120.2-201ENST00000524091 540 ntBASIC16.23■□□□□ 0.19
TNFP01375 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.23■□□□□ 0.19
TNFP01375 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.23■□□□□ 0.19
TNFP01375 MIR4453-201ENST00000584019 89 ntBASIC16.23■□□□□ 0.19
TNFP01375 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.23■□□□□ 0.19
TNFP01375 AL390955.2-201ENST00000603032 514 ntBASIC16.23■□□□□ 0.19
TNFP01375 AC018529.1-201ENST00000613063 361 ntBASIC16.23■□□□□ 0.19
TNFP01375 SPTSSB-204ENST00000617024 1292 ntBASIC16.23■□□□□ 0.19
TNFP01375 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TNFP01375 AC073439.1-201ENST00000624121 1774 ntBASIC16.23■□□□□ 0.19
TNFP01375 AC060834.1-201ENST00000443027 2032 ntBASIC16.23■□□□□ 0.19
TNFP01375 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 AL645728.1-201ENST00000366221 2101 ntBASIC16.22■□□□□ 0.19
TNFP01375 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.22■□□□□ 0.19
TNFP01375 TREML5P-201ENST00000421694 576 ntBASIC16.22■□□□□ 0.19
TNFP01375 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.22■□□□□ 0.19
TNFP01375 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.22■□□□□ 0.19
TNFP01375 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms