Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHGA3Q9Y5H0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHGA3Q9Y5H0 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 KRT18P10-201ENST00000388836 1287 ntBASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA3Q9Y5H0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.08■■□□□ 1.29
PCDHGA3Q9Y5H0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PCDHGA3Q9Y5H0 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
PCDHGA3Q9Y5H0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
PCDHGA3Q9Y5H0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 THA1P-201ENST00000590384 1145 ntBASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 AC131212.1-201ENST00000613771 668 ntBASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
PCDHGA3Q9Y5H0 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA3Q9Y5H0 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 Z92544.1-202ENST00000571933 1220 ntBASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
PCDHGA3Q9Y5H0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.02■■□□□ 1.28
PCDHGA3Q9Y5H0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA3Q9Y5H0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 AL356441.2-201ENST00000443009 864 ntBASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 AC022616.5-201ENST00000518796 181 ntBASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23■■□□□ 1.27
PCDHGA3Q9Y5H0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA3Q9Y5H0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA3Q9Y5H0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHGA3Q9Y5H0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA3Q9Y5H0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA3Q9Y5H0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDHGA3Q9Y5H0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
PCDHGA3Q9Y5H0 AC239859.2-201ENST00000444165 318 ntBASIC22.98■■□□□ 1.27
PCDHGA3Q9Y5H0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA3Q9Y5H0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms