Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 PEMT-206ENST00000435340 960 ntTSL 5 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 BX255925.1-201ENST00000566954 1854 ntBASIC7.28□□□□□ -1.24
SYNE1Q8NF91 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 MIR638-201ENST00000385237 100 ntBASIC7.28□□□□□ -1.24
SYNE1Q8NF91 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 AC019171.1-201ENST00000601251 1056 ntBASIC7.28□□□□□ -1.24
SYNE1Q8NF91 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SYNE1Q8NF91 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.24
SYNE1Q8NF91 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 LSM7-203ENST00000585409 512 ntTSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 MIR4787-201ENST00000607364 84 ntBASIC7.27□□□□□ -1.25
SYNE1Q8NF91 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 LINC01003-201ENST00000564834 1764 ntBASIC7.27□□□□□ -1.25
SYNE1Q8NF91 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SYNE1Q8NF91 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 PROC-203ENST00000409048 1586 ntTSL 5 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 AC092028.1-203ENST00000608262 953 ntBASIC7.26□□□□□ -1.25
SYNE1Q8NF91 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SYNE1Q8NF91 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 AC131281.2-201ENST00000520478 145 ntBASIC7.25□□□□□ -1.25
SYNE1Q8NF91 GRAMD4P7-201ENST00000578182 1232 ntBASIC7.25□□□□□ -1.25
SYNE1Q8NF91 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 AC110285.6-201ENST00000617652 491 ntBASIC7.25□□□□□ -1.25
SYNE1Q8NF91 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms