Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
VPS52Q8N1B4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
VPS52Q8N1B4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.84■■□□□ 1.73
VPS52Q8N1B4 Z92544.1-202ENST00000571933 1220 ntBASIC25.84■■□□□ 1.73
VPS52Q8N1B4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
VPS52Q8N1B4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 KRT18P10-201ENST00000388836 1287 ntBASIC25.83■■□□□ 1.73
VPS52Q8N1B4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
VPS52Q8N1B4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
VPS52Q8N1B4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
VPS52Q8N1B4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
VPS52Q8N1B4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
VPS52Q8N1B4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
VPS52Q8N1B4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
VPS52Q8N1B4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
VPS52Q8N1B4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
VPS52Q8N1B4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.78■■□□□ 1.72
VPS52Q8N1B4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC25.78■■□□□ 1.72
VPS52Q8N1B4 AC022616.5-201ENST00000518796 181 ntBASIC25.78■■□□□ 1.72
VPS52Q8N1B4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.78■■□□□ 1.72
VPS52Q8N1B4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
VPS52Q8N1B4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
VPS52Q8N1B4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
VPS52Q8N1B4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
VPS52Q8N1B4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 AC019069.1-201ENST00000610008 1333 ntBASIC25.75■■□□□ 1.71
VPS52Q8N1B4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 KRT125P-201ENST00000546827 989 ntBASIC25.75■■□□□ 1.71
VPS52Q8N1B4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
VPS52Q8N1B4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
VPS52Q8N1B4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.74■■□□□ 1.71
VPS52Q8N1B4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
VPS52Q8N1B4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
VPS52Q8N1B4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
VPS52Q8N1B4 BX664725.1-201ENST00000438252 379 ntBASIC25.72■■□□□ 1.71
VPS52Q8N1B4 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.72■■□□□ 1.71
VPS52Q8N1B4 MIR4787-201ENST00000607364 84 ntBASIC25.72■■□□□ 1.71
VPS52Q8N1B4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
VPS52Q8N1B4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
VPS52Q8N1B4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.72■■□□□ 1.71
VPS52Q8N1B4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
VPS52Q8N1B4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
VPS52Q8N1B4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
VPS52Q8N1B4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
VPS52Q8N1B4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
VPS52Q8N1B4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.71■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms