Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.62■■□□□ 1.69
VPS36Q86VN1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.62■■□□□ 1.69
VPS36Q86VN1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS36Q86VN1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
VPS36Q86VN1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS36Q86VN1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS36Q86VN1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
VPS36Q86VN1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS36Q86VN1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
VPS36Q86VN1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.59■■□□□ 1.69
VPS36Q86VN1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
VPS36Q86VN1 AL157400.5-201ENST00000507624 621 ntBASIC25.59■■□□□ 1.69
VPS36Q86VN1 MIR3960-201ENST00000583311 91 ntBASIC25.59■■□□□ 1.69
VPS36Q86VN1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.59■■□□□ 1.69
VPS36Q86VN1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
VPS36Q86VN1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
VPS36Q86VN1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
VPS36Q86VN1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.58■■□□□ 1.69
VPS36Q86VN1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.58■■□□□ 1.69
VPS36Q86VN1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.58■■□□□ 1.69
VPS36Q86VN1 AC025884.2-201ENST00000553429 711 ntBASIC25.57■■□□□ 1.68
VPS36Q86VN1 AC060814.1-201ENST00000554326 538 ntBASIC25.57■■□□□ 1.68
VPS36Q86VN1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
VPS36Q86VN1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
VPS36Q86VN1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS36Q86VN1 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS36Q86VN1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS36Q86VN1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
VPS36Q86VN1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS36Q86VN1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS36Q86VN1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS36Q86VN1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS36Q86VN1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS36Q86VN1 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS36Q86VN1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS36Q86VN1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.54■■□□□ 1.68
VPS36Q86VN1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
VPS36Q86VN1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
VPS36Q86VN1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
VPS36Q86VN1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS36Q86VN1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS36Q86VN1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS36Q86VN1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
VPS36Q86VN1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS36Q86VN1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
VPS36Q86VN1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS36Q86VN1 AL139125.2-201ENST00000623134 1869 ntBASIC25.53■■□□□ 1.68
VPS36Q86VN1 SMPD5-203ENST00000639008 1464 ntBASIC25.53■■□□□ 1.68
VPS36Q86VN1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.52■■□□□ 1.68
VPS36Q86VN1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS36Q86VN1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.52■■□□□ 1.68
VPS36Q86VN1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS36Q86VN1 AP003733.4-201ENST00000623785 1697 ntBASIC25.52■■□□□ 1.68
VPS36Q86VN1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.51■■□□□ 1.68
VPS36Q86VN1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS36Q86VN1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
VPS36Q86VN1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS36Q86VN1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS36Q86VN1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
VPS36Q86VN1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
VPS36Q86VN1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS36Q86VN1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
VPS36Q86VN1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS36Q86VN1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS36Q86VN1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
VPS36Q86VN1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS36Q86VN1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VPS36Q86VN1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.49■■□□□ 1.67
VPS36Q86VN1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.48■■□□□ 1.67
VPS36Q86VN1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS36Q86VN1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS36Q86VN1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
VPS36Q86VN1 AC092296.2-201ENST00000589470 999 ntBASIC25.47■■□□□ 1.67
VPS36Q86VN1 SLC6A10P-202ENST00000431994 2058 ntBASIC25.47■■□□□ 1.67
VPS36Q86VN1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS36Q86VN1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS36Q86VN1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms