Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LRRK2Q5S007 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
LRRK2Q5S007 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK2Q5S007 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
LRRK2Q5S007 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK2Q5S007 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.24■□□□□ 0.99
LRRK2Q5S007 AC024257.2-201ENST00000549699 147 ntBASIC21.24■□□□□ 0.99
LRRK2Q5S007 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK2Q5S007 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRK2Q5S007 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRK2Q5S007 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK2Q5S007 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK2Q5S007 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK2Q5S007 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.22■□□□□ 0.99
LRRK2Q5S007 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK2Q5S007 MIR939-201ENST00000401314 82 ntBASIC21.21■□□□□ 0.99
LRRK2Q5S007 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.21■□□□□ 0.99
LRRK2Q5S007 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
LRRK2Q5S007 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.21■□□□□ 0.99
LRRK2Q5S007 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK2Q5S007 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRK2Q5S007 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK2Q5S007 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK2Q5S007 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK2Q5S007 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRK2Q5S007 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.2■□□□□ 0.98
LRRK2Q5S007 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK2Q5S007 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.2■□□□□ 0.98
LRRK2Q5S007 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK2Q5S007 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK2Q5S007 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK2Q5S007 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK2Q5S007 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK2Q5S007 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK2Q5S007 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK2Q5S007 KRT18P10-201ENST00000388836 1287 ntBASIC21.19■□□□□ 0.98
LRRK2Q5S007 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
LRRK2Q5S007 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.19■□□□□ 0.98
LRRK2Q5S007 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRK2Q5S007 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LRRK2Q5S007 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK2Q5S007 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK2Q5S007 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRK2Q5S007 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK2Q5S007 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRK2Q5S007 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRK2Q5S007 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK2Q5S007 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK2Q5S007 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRK2Q5S007 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRK2Q5S007 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK2Q5S007 UNC93B3-201ENST00000308076 687 ntBASIC21.16■□□□□ 0.98
LRRK2Q5S007 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.16■□□□□ 0.98
LRRK2Q5S007 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LRRK2Q5S007 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK2Q5S007 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK2Q5S007 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRK2Q5S007 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK2Q5S007 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRK2Q5S007 ABCB10P3-201ENST00000561950 2166 ntBASIC21.15■□□□□ 0.98
LRRK2Q5S007 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LRRK2Q5S007 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK2Q5S007 AP001330.3-201ENST00000520123 633 ntBASIC21.15■□□□□ 0.98
LRRK2Q5S007 AC011551.1-201ENST00000614101 683 ntBASIC21.15■□□□□ 0.98
LRRK2Q5S007 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK2Q5S007 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRK2Q5S007 RASA4CP-201ENST00000424092 1398 ntBASIC21.15■□□□□ 0.98
LRRK2Q5S007 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.15■□□□□ 0.98
LRRK2Q5S007 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.14■□□□□ 0.98
LRRK2Q5S007 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRK2Q5S007 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRK2Q5S007 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.14■□□□□ 0.98
LRRK2Q5S007 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LRRK2Q5S007 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LRRK2Q5S007 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LRRK2Q5S007 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRK2Q5S007 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.14■□□□□ 0.97
LRRK2Q5S007 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LRRK2Q5S007 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.13■□□□□ 0.97
LRRK2Q5S007 AL136162.1-201ENST00000607711 1078 ntBASIC21.13■□□□□ 0.97
LRRK2Q5S007 ST7-AS1-201ENST00000456775 1889 ntBASIC21.13■□□□□ 0.97
LRRK2Q5S007 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRK2Q5S007 ESRRAP2-201ENST00000418437 1549 ntBASIC21.13■□□□□ 0.97
LRRK2Q5S007 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRK2Q5S007 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.13■□□□□ 0.97
LRRK2Q5S007 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRK2Q5S007 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRK2Q5S007 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRK2Q5S007 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LRRK2Q5S007 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRK2Q5S007 AC091305.1-201ENST00000479476 895 ntBASIC21.12■□□□□ 0.97
LRRK2Q5S007 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRK2Q5S007 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRK2Q5S007 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRK2Q5S007 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
LRRK2Q5S007 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRK2Q5S007 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRK2Q5S007 AL136967.2-201ENST00000623968 743 ntBASIC21.12■□□□□ 0.97
LRRK2Q5S007 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRK2Q5S007 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms