Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM4P50479 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.24■□□□□ 0.83
PDLIM4P50479 AC131212.1-201ENST00000613771 668 ntBASIC20.24■□□□□ 0.83
PDLIM4P50479 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PDLIM4P50479 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM4P50479 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM4P50479 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PDLIM4P50479 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM4P50479 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.23■□□□□ 0.83
PDLIM4P50479 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM4P50479 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PDLIM4P50479 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
PDLIM4P50479 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM4P50479 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM4P50479 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM4P50479 AC239859.2-201ENST00000444165 318 ntBASIC20.22■□□□□ 0.83
PDLIM4P50479 Z92544.1-202ENST00000571933 1220 ntBASIC20.22■□□□□ 0.83
PDLIM4P50479 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.22■□□□□ 0.83
PDLIM4P50479 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
PDLIM4P50479 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.22■□□□□ 0.83
PDLIM4P50479 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM4P50479 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.21■□□□□ 0.83
PDLIM4P50479 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM4P50479 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.21■□□□□ 0.83
PDLIM4P50479 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM4P50479 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
PDLIM4P50479 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.21■□□□□ 0.83
PDLIM4P50479 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.21■□□□□ 0.83
PDLIM4P50479 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM4P50479 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
PDLIM4P50479 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM4P50479 THA1P-201ENST00000590384 1145 ntBASIC20.2■□□□□ 0.82
PDLIM4P50479 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PDLIM4P50479 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM4P50479 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.2■□□□□ 0.82
PDLIM4P50479 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PDLIM4P50479 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.19■□□□□ 0.82
PDLIM4P50479 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM4P50479 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM4P50479 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.19■□□□□ 0.82
PDLIM4P50479 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM4P50479 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
PDLIM4P50479 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM4P50479 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 KRT125P-201ENST00000546827 989 ntBASIC20.18■□□□□ 0.82
PDLIM4P50479 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.18■□□□□ 0.82
PDLIM4P50479 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM4P50479 AP004609.3-201ENST00000610705 1884 ntBASIC20.18■□□□□ 0.82
PDLIM4P50479 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM4P50479 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM4P50479 BX664725.1-201ENST00000438252 379 ntBASIC20.17■□□□□ 0.82
PDLIM4P50479 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PDLIM4P50479 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM4P50479 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM4P50479 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
PDLIM4P50479 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM4P50479 AL356441.2-201ENST00000443009 864 ntBASIC20.16■□□□□ 0.82
PDLIM4P50479 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.16■□□□□ 0.82
PDLIM4P50479 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.16■□□□□ 0.82
PDLIM4P50479 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PDLIM4P50479 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM4P50479 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM4P50479 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM4P50479 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM4P50479 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
PDLIM4P50479 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.14■□□□□ 0.81
PDLIM4P50479 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.14■□□□□ 0.81
PDLIM4P50479 KRT18P24-201ENST00000344739 1156 ntBASIC20.14■□□□□ 0.81
PDLIM4P50479 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM4P50479 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
PDLIM4P50479 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.14■□□□□ 0.81
PDLIM4P50479 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.14■□□□□ 0.81
PDLIM4P50479 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM4P50479 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM4P50479 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM4P50479 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PDLIM4P50479 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM4P50479 AL592295.1-201ENST00000400984 884 ntBASIC20.13■□□□□ 0.81
PDLIM4P50479 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
PDLIM4P50479 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM4P50479 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.13■□□□□ 0.81
PDLIM4P50479 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM4P50479 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM4P50479 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM4P50479 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PDLIM4P50479 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM4P50479 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.11■□□□□ 0.81
PDLIM4P50479 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM4P50479 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.11■□□□□ 0.81
PDLIM4P50479 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM4P50479 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms