Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
APOBP04114 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC15.27■□□□□ 0.03
APOBP04114 MIR6821-201ENST00000617625 74 ntBASIC15.27■□□□□ 0.03
APOBP04114 MIR6724-1-201ENST00000616420 92 ntBASIC15.26■□□□□ 0.03
APOBP04114 MIR6724-2-201ENST00000616483 92 ntBASIC15.26■□□□□ 0.03
APOBP04114 MIR6724-4-201ENST00000617390 92 ntBASIC15.26■□□□□ 0.03
APOBP04114 MIR6724-3-201ENST00000622482 92 ntBASIC15.26■□□□□ 0.03
APOBP04114 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
APOBP04114 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC15.26■□□□□ 0.03
APOBP04114 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC15.26■□□□□ 0.03
APOBP04114 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOBP04114 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOBP04114 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC15.26■□□□□ 0.03
APOBP04114 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOBP04114 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
APOBP04114 AL162430.1-201ENST00000480705 870 ntBASIC15.26■□□□□ 0.03
APOBP04114 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
APOBP04114 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC15.25■□□□□ 0.03
APOBP04114 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
APOBP04114 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
APOBP04114 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
APOBP04114 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOBP04114 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOBP04114 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOBP04114 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.24■□□□□ 0.03
APOBP04114 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC15.24■□□□□ 0.03
APOBP04114 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOBP04114 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC15.24■□□□□ 0.03
APOBP04114 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOBP04114 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOBP04114 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOBP04114 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOBP04114 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC15.23■□□□□ 0.03
APOBP04114 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOBP04114 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOBP04114 AF131216.4-201ENST00000638924 1588 ntBASIC15.23■□□□□ 0.03
APOBP04114 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
APOBP04114 MTDHP2-201ENST00000601468 714 ntBASIC15.22■□□□□ 0.03
APOBP04114 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
APOBP04114 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOBP04114 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOBP04114 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOBP04114 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.21■□□□□ 0.03
APOBP04114 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOBP04114 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
APOBP04114 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC15.21■□□□□ 0.03
APOBP04114 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOBP04114 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
APOBP04114 AC142381.2-201ENST00000566120 298 ntBASIC15.21■□□□□ 0.02
APOBP04114 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
APOBP04114 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15.2■□□□□ 0.02
APOBP04114 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC15.2■□□□□ 0.02
APOBP04114 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOBP04114 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC15.2■□□□□ 0.02
APOBP04114 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
APOBP04114 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 AL449106.1-201ENST00000608517 1980 ntBASIC15.19■□□□□ 0.02
APOBP04114 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOBP04114 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC15.19■□□□□ 0.02
APOBP04114 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC15.19■□□□□ 0.02
APOBP04114 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC15.19■□□□□ 0.02
APOBP04114 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC15.19■□□□□ 0.02
APOBP04114 ANKRD20A6P-201ENST00000618763 204 ntBASIC15.19■□□□□ 0.02
APOBP04114 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOBP04114 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
APOBP04114 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC15.18■□□□□ 0.02
APOBP04114 AC106739.1-201ENST00000617035 715 ntBASIC15.18■□□□□ 0.02
APOBP04114 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
APOBP04114 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOBP04114 AC011551.1-201ENST00000614101 683 ntBASIC15.18■□□□□ 0.02
APOBP04114 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOBP04114 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC15.18■□□□□ 0.02
APOBP04114 UNC93B3-201ENST00000308076 687 ntBASIC15.18■□□□□ 0.02
APOBP04114 AC087623.3-201ENST00000607047 1098 ntBASIC15.18■□□□□ 0.02
APOBP04114 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
APOBP04114 AC024257.2-201ENST00000549699 147 ntBASIC15.17■□□□□ 0.02
APOBP04114 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC15.17■□□□□ 0.02
APOBP04114 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOBP04114 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOBP04114 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms