Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 MIR935-201ENST00000401179 91 ntBASIC22.27■■□□□ 1.16
PDGFAP04085 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDGFAP04085 MIR4787-201ENST00000607364 84 ntBASIC22.27■■□□□ 1.16
PDGFAP04085 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.27■■□□□ 1.15
PDGFAP04085 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
PDGFAP04085 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFAP04085 AC142086.6-201ENST00000621154 1765 ntBASIC22.26■■□□□ 1.15
PDGFAP04085 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFAP04085 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PDGFAP04085 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.26■■□□□ 1.15
PDGFAP04085 UNC93B8-201ENST00000511903 705 ntBASIC22.26■■□□□ 1.15
PDGFAP04085 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
PDGFAP04085 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
PDGFAP04085 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFAP04085 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFAP04085 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.25■■□□□ 1.15
PDGFAP04085 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.25■■□□□ 1.15
PDGFAP04085 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.25■■□□□ 1.15
PDGFAP04085 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFAP04085 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.25■■□□□ 1.15
PDGFAP04085 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFAP04085 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.24■■□□□ 1.15
PDGFAP04085 KRT125P-201ENST00000546827 989 ntBASIC22.24■■□□□ 1.15
PDGFAP04085 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PDGFAP04085 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFAP04085 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFAP04085 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PDGFAP04085 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFAP04085 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC22.23■■□□□ 1.15
PDGFAP04085 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.23■■□□□ 1.15
PDGFAP04085 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.23■■□□□ 1.15
PDGFAP04085 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFAP04085 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.23■■□□□ 1.15
PDGFAP04085 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.22■■□□□ 1.15
PDGFAP04085 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.22■■□□□ 1.15
PDGFAP04085 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 BX664725.1-201ENST00000438252 379 ntBASIC22.22■■□□□ 1.15
PDGFAP04085 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.22■■□□□ 1.15
PDGFAP04085 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFAP04085 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFAP04085 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFAP04085 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.21■■□□□ 1.15
PDGFAP04085 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFAP04085 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
PDGFAP04085 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFAP04085 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFAP04085 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.19■■□□□ 1.14
PDGFAP04085 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.19■■□□□ 1.14
PDGFAP04085 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFAP04085 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.19■■□□□ 1.14
PDGFAP04085 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
PDGFAP04085 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.18■■□□□ 1.14
PDGFAP04085 AL449106.1-201ENST00000608517 1980 ntBASIC22.18■■□□□ 1.14
PDGFAP04085 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
PDGFAP04085 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.18■■□□□ 1.14
PDGFAP04085 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 KRT16P3-201ENST00000439127 1283 ntBASIC22.18■■□□□ 1.14
PDGFAP04085 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.18■■□□□ 1.14
PDGFAP04085 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PDGFAP04085 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFAP04085 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
PDGFAP04085 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PDGFAP04085 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.17■■□□□ 1.14
PDGFAP04085 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.17■■□□□ 1.14
PDGFAP04085 AL121749.1-202ENST00000609313 2153 ntBASIC22.17■■□□□ 1.14
PDGFAP04085 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PDGFAP04085 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PDGFAP04085 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
PDGFAP04085 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.16■■□□□ 1.14
PDGFAP04085 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PDGFAP04085 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PDGFAP04085 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PDGFAP04085 AC022616.5-201ENST00000518796 181 ntBASIC22.16■■□□□ 1.14
PDGFAP04085 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.16■■□□□ 1.14
PDGFAP04085 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.16■■□□□ 1.14
PDGFAP04085 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
PDGFAP04085 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PDGFAP04085 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PDGFAP04085 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PDGFAP04085 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PDGFAP04085 KRT18P24-201ENST00000344739 1156 ntBASIC22.15■■□□□ 1.14
PDGFAP04085 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.15■■□□□ 1.14
PDGFAP04085 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PDGFAP04085 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.14
PDGFAP04085 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.14■■□□□ 1.13
PDGFAP04085 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.14■■□□□ 1.13
PDGFAP04085 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PDGFAP04085 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
PDGFAP04085 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms