Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RAF1P04049 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
RAF1P04049 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.48■■□□□ 1.03
RAF1P04049 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RAF1P04049 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RAF1P04049 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RAF1P04049 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RAF1P04049 AL451085.2-201ENST00000605085 799 ntBASIC21.48■■□□□ 1.03
RAF1P04049 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
RAF1P04049 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.48■■□□□ 1.03
RAF1P04049 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
RAF1P04049 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RAF1P04049 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
RAF1P04049 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.47■■□□□ 1.03
RAF1P04049 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RAF1P04049 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RAF1P04049 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
RAF1P04049 SMPD5-203ENST00000639008 1464 ntBASIC21.46■■□□□ 1.03
RAF1P04049 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RAF1P04049 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RAF1P04049 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RAF1P04049 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RAF1P04049 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.45■■□□□ 1.02
RAF1P04049 WHAMMP3-201ENST00000611636 1609 ntBASIC21.45■■□□□ 1.02
RAF1P04049 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RAF1P04049 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RAF1P04049 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RAF1P04049 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
RAF1P04049 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RAF1P04049 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RAF1P04049 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RAF1P04049 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.44■■□□□ 1.02
RAF1P04049 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.44■■□□□ 1.02
RAF1P04049 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.44■■□□□ 1.02
RAF1P04049 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 BHLHE23-202ENST00000612929 1109 ntBASIC21.43■■□□□ 1.02
RAF1P04049 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RAF1P04049 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.43■■□□□ 1.02
RAF1P04049 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RAF1P04049 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAF1P04049 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAF1P04049 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAF1P04049 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.42■■□□□ 1.02
RAF1P04049 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAF1P04049 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAF1P04049 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAF1P04049 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAF1P04049 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.41■■□□□ 1.02
RAF1P04049 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAF1P04049 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
RAF1P04049 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAF1P04049 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
RAF1P04049 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.4■■□□□ 1.02
RAF1P04049 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.4■■□□□ 1.02
RAF1P04049 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RAF1P04049 AC026202.3-201ENST00000600805 1127 ntBASIC21.4■■□□□ 1.02
RAF1P04049 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RAF1P04049 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAF1P04049 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAF1P04049 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
RAF1P04049 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.39■■□□□ 1.01
RAF1P04049 AC074183.2-201ENST00000623112 922 ntBASIC21.39■■□□□ 1.01
RAF1P04049 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RAF1P04049 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.39■■□□□ 1.01
RAF1P04049 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAF1P04049 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.38■■□□□ 1.01
RAF1P04049 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.38■■□□□ 1.01
RAF1P04049 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.38■■□□□ 1.01
RAF1P04049 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAF1P04049 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAF1P04049 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RAF1P04049 AL359258.2-201ENST00000564063 1566 ntBASIC21.37■■□□□ 1.01
RAF1P04049 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAF1P04049 DUX4L9-201ENST00000449051 1259 ntBASIC21.37■■□□□ 1.01
RAF1P04049 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.37■■□□□ 1.01
RAF1P04049 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.37■■□□□ 1.01
RAF1P04049 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.37■■□□□ 1.01
RAF1P04049 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RAF1P04049 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RAF1P04049 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
RAF1P04049 RP9P-202ENST00000450133 1212 ntBASIC21.35■■□□□ 1.01
RAF1P04049 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.35■■□□□ 1.01
RAF1P04049 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RAF1P04049 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RAF1P04049 AC010501.1-201ENST00000606270 1962 ntBASIC21.34■■□□□ 1.01
RAF1P04049 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RAF1P04049 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
RAF1P04049 AL592295.1-201ENST00000400984 884 ntBASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms