Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 IKBKGP1-201ENST00000612193 1073 ntBASIC23.85■■□□□ 1.41
GFRA3O60609 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.85■■□□□ 1.41
GFRA3O60609 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.85■■□□□ 1.41
GFRA3O60609 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.84■■□□□ 1.41
GFRA3O60609 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.84■■□□□ 1.41
GFRA3O60609 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.84■■□□□ 1.41
GFRA3O60609 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
GFRA3O60609 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.84■■□□□ 1.41
GFRA3O60609 AC100797.4-201ENST00000631653 1827 ntBASIC23.84■■□□□ 1.41
GFRA3O60609 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
GFRA3O60609 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
GFRA3O60609 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
GFRA3O60609 MIR939-201ENST00000401314 82 ntBASIC23.82■■□□□ 1.4
GFRA3O60609 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.82■■□□□ 1.4
GFRA3O60609 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
GFRA3O60609 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
GFRA3O60609 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
GFRA3O60609 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
GFRA3O60609 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.81■■□□□ 1.4
GFRA3O60609 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
GFRA3O60609 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
GFRA3O60609 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
GFRA3O60609 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.8■■□□□ 1.4
GFRA3O60609 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.8■■□□□ 1.4
GFRA3O60609 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.79■■□□□ 1.4
GFRA3O60609 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
GFRA3O60609 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
GFRA3O60609 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.79■■□□□ 1.4
GFRA3O60609 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.79■■□□□ 1.4
GFRA3O60609 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.79■■□□□ 1.4
GFRA3O60609 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
GFRA3O60609 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.78■■□□□ 1.4
GFRA3O60609 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
GFRA3O60609 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
GFRA3O60609 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.78■■□□□ 1.4
GFRA3O60609 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
GFRA3O60609 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
GFRA3O60609 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.77■■□□□ 1.4
GFRA3O60609 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
GFRA3O60609 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.77■■□□□ 1.4
GFRA3O60609 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.77■■□□□ 1.4
GFRA3O60609 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
GFRA3O60609 AC091305.1-201ENST00000479476 895 ntBASIC23.77■■□□□ 1.4
GFRA3O60609 AP001330.3-201ENST00000520123 633 ntBASIC23.77■■□□□ 1.4
GFRA3O60609 AC022517.1-201ENST00000592429 346 ntBASIC23.77■■□□□ 1.4
GFRA3O60609 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
GFRA3O60609 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
GFRA3O60609 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
GFRA3O60609 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
GFRA3O60609 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
GFRA3O60609 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.76■■□□□ 1.39
GFRA3O60609 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
GFRA3O60609 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.76■■□□□ 1.39
GFRA3O60609 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.76■■□□□ 1.39
GFRA3O60609 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
GFRA3O60609 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
GFRA3O60609 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
GFRA3O60609 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.75■■□□□ 1.39
GFRA3O60609 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
GFRA3O60609 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.75■■□□□ 1.39
GFRA3O60609 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
GFRA3O60609 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
GFRA3O60609 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.74■■□□□ 1.39
GFRA3O60609 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
GFRA3O60609 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
GFRA3O60609 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
GFRA3O60609 AP004833.2-201ENST00000532228 1454 ntBASIC23.74■■□□□ 1.39
GFRA3O60609 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.73■■□□□ 1.39
GFRA3O60609 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.73■■□□□ 1.39
GFRA3O60609 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
GFRA3O60609 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
GFRA3O60609 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
GFRA3O60609 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
GFRA3O60609 SRD5A1P1-201ENST00000442297 786 ntBASIC23.72■■□□□ 1.39
GFRA3O60609 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
GFRA3O60609 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
GFRA3O60609 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
GFRA3O60609 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.72■■□□□ 1.39
GFRA3O60609 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
GFRA3O60609 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.71■■□□□ 1.39
GFRA3O60609 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
GFRA3O60609 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.7■■□□□ 1.38
GFRA3O60609 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
GFRA3O60609 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
GFRA3O60609 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
GFRA3O60609 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.7■■□□□ 1.38
GFRA3O60609 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
GFRA3O60609 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.69■■□□□ 1.38
GFRA3O60609 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
GFRA3O60609 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.68■■□□□ 1.38
GFRA3O60609 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
GFRA3O60609 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.68■■□□□ 1.38
GFRA3O60609 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
GFRA3O60609 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
GFRA3O60609 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms