Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PMS2P1-201ENST00000431037 1228 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AC104692.2-201ENST00000603054 253 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AC148477.8-201ENST00000624298 468 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AC117500.6-201ENST00000624871 588 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 SLC22A20-204ENST00000530038 1673 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.64■□□□□ 0.26
VPS9D1Q9Y2B5 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.26
VPS9D1Q9Y2B5 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 AC092910.1-201ENST00000482027 1129 ntBASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 ADAM3B-201ENST00000569937 840 ntBASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 AL391001.1-201ENST00000602747 715 ntBASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS9D1Q9Y2B5 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AC092171.3-201ENST00000610122 2651 ntBASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AP001005.1-201ENST00000571755 1248 ntBASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AL121894.2-201ENST00000602977 491 ntBASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 AC004790.2-201ENST00000623588 572 ntBASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS9D1Q9Y2B5 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 GGT3P-204ENST00000453783 1664 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SNX33P1-201ENST00000592116 1762 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms