Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 ALOX12P2-203ENST00000570921 1945 ntBASIC17.79■□□□□ 0.44
CISHQ9NSE2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 AC092474.2-201ENST00000424288 719 ntBASIC17.79■□□□□ 0.44
CISHQ9NSE2 AC004832.2-201ENST00000426397 482 ntBASIC17.79■□□□□ 0.44
CISHQ9NSE2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 GPAA1P2-202ENST00000606848 1787 ntBASIC17.79■□□□□ 0.44
CISHQ9NSE2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.78■□□□□ 0.44
CISHQ9NSE2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 AC079328.2-201ENST00000561241 3354 ntBASIC17.78■□□□□ 0.44
CISHQ9NSE2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MCCD1P2-201ENST00000423228 335 ntBASIC17.78■□□□□ 0.44
CISHQ9NSE2 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CISHQ9NSE2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CISHQ9NSE2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CISHQ9NSE2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.77■□□□□ 0.44
CISHQ9NSE2 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CISHQ9NSE2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CISHQ9NSE2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
CISHQ9NSE2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
CISHQ9NSE2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CISHQ9NSE2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CISHQ9NSE2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.76■□□□□ 0.43
CISHQ9NSE2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CISHQ9NSE2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms