Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 AL355877.3-201ENST00000622820 899 ntBASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 FGFR3P6-201ENST00000457012 610 ntBASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 MTDHP4-201ENST00000600287 670 ntBASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AL121772.3-201ENST00000610840 674 ntBASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AL589182.2-201ENST00000619332 1049 ntBASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLHC1Q8NHS4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 PAUPAR-201ENST00000630360 2965 ntBASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 AL671710.1-201ENST00000610245 2349 ntBASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLHC1Q8NHS4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 PRELID1P1-202ENST00000567272 903 ntBASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms