Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.52□□□□□ -0.24
CX3CL1P78423 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CX3CL1P78423 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.52□□□□□ -0.25
CX3CL1P78423 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 MRPL3P1-201ENST00000400109 1033 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 RPS15P9-201ENST00000494093 319 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 AC093909.1-201ENST00000504731 1122 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.52□□□□□ -0.25
CX3CL1P78423 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.52□□□□□ -0.25
CX3CL1P78423 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 AL662844.1-201ENST00000546340 181 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 AC012640.2-201ENST00000561606 901 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 AL356488.2-201ENST00000602755 427 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CX3CL1P78423 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.52□□□□□ -0.25
CX3CL1P78423 AF228730.7-201ENST00000641842 219 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 AC005915.1-201ENST00000624912 2018 ntBASIC13.52□□□□□ -0.25
CX3CL1P78423 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.52□□□□□ -0.25
CX3CL1P78423 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.52□□□□□ -0.25
CX3CL1P78423 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.52□□□□□ -0.25
CX3CL1P78423 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CX3CL1P78423 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.51□□□□□ -0.25
CX3CL1P78423 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.51□□□□□ -0.25
CX3CL1P78423 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 AP002414.3-201ENST00000589352 1468 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.51□□□□□ -0.25
CX3CL1P78423 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 AL021920.2-201ENST00000624828 1351 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 TUBB8P12-201ENST00000308911 1335 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 TUBB7P-202ENST00000428444 1305 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.51□□□□□ -0.25
CX3CL1P78423 TUBB8P7-204ENST00000567960 1332 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PAWRP1-201ENST00000451083 565 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
CX3CL1P78423 AC009078.2-202ENST00000463353 338 ntBASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms