Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.21■□□□□ 0.18
FOXA1P55317 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
FOXA1P55317 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.2■□□□□ 0.18
FOXA1P55317 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.2■□□□□ 0.18
FOXA1P55317 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.2■□□□□ 0.18
FOXA1P55317 AF238378.1-201ENST00000526806 358 ntBASIC16.2■□□□□ 0.18
FOXA1P55317 AC091304.2-201ENST00000564639 760 ntBASIC16.2■□□□□ 0.18
FOXA1P55317 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
FOXA1P55317 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.2■□□□□ 0.18
FOXA1P55317 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
FOXA1P55317 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA1P55317 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
FOXA1P55317 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA1P55317 AF228730.7-201ENST00000641842 219 ntBASIC16.2■□□□□ 0.18
FOXA1P55317 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA1P55317 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA1P55317 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
FOXA1P55317 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA1P55317 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA1P55317 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
FOXA1P55317 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 AC010491.1-201ENST00000563101 2797 ntBASIC16.19■□□□□ 0.18
FOXA1P55317 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA1P55317 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.19■□□□□ 0.18
FOXA1P55317 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA1P55317 AC107918.2-201ENST00000530817 355 ntBASIC16.19■□□□□ 0.18
FOXA1P55317 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA1P55317 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.19■□□□□ 0.18
FOXA1P55317 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
FOXA1P55317 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA1P55317 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA1P55317 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA1P55317 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA1P55317 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA1P55317 LINC00554-201ENST00000564841 3011 ntBASIC16.19■□□□□ 0.18
FOXA1P55317 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 AC105917.1-201ENST00000506637 2539 ntBASIC16.18■□□□□ 0.18
FOXA1P55317 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms