Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 MIR943-201ENST00000401286 94 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.29■□□□□ 0.52
CLCN3P51790 SPDYE7P-202ENST00000420373 878 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 AC107890.1-201ENST00000422478 521 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 FAM8A3P-201ENST00000427218 844 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.29■□□□□ 0.52
CLCN3P51790 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.29■□□□□ 0.52
CLCN3P51790 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.29■□□□□ 0.52
CLCN3P51790 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.29■□□□□ 0.52
CLCN3P51790 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLCN3P51790 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLCN3P51790 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.28■□□□□ 0.52
CLCN3P51790 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.28■□□□□ 0.52
CLCN3P51790 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.28■□□□□ 0.52
CLCN3P51790 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 AC093214.1-201ENST00000511688 1107 ntBASIC18.28■□□□□ 0.52
CLCN3P51790 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.28■□□□□ 0.52
CLCN3P51790 AP002490.2-201ENST00000524791 560 ntBASIC18.28■□□□□ 0.52
CLCN3P51790 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.28■□□□□ 0.52
CLCN3P51790 MIR4453-201ENST00000584019 89 ntBASIC18.28■□□□□ 0.52
CLCN3P51790 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 AL603756.1-201ENST00000606511 2163 ntBASIC18.28■□□□□ 0.52
CLCN3P51790 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCN3P51790 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CLCN3P51790 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCN3P51790 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.27■□□□□ 0.52
CLCN3P51790 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.27■□□□□ 0.52
CLCN3P51790 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CLCN3P51790 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.27■□□□□ 0.52
CLCN3P51790 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 TREML5P-201ENST00000421694 576 ntBASIC18.27■□□□□ 0.52
CLCN3P51790 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCN3P51790 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.27■□□□□ 0.52
CLCN3P51790 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 RARRES2P9-201ENST00000565168 469 ntBASIC18.27■□□□□ 0.52
CLCN3P51790 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCN3P51790 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms