Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC19.25■□□□□ 0.67
COL2A1P02458 LINC01144-201ENST00000626198 1710 ntBASIC19.25■□□□□ 0.67
COL2A1P02458 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.24■□□□□ 0.67
COL2A1P02458 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL2A1P02458 AL353779.1-201ENST00000434793 351 ntBASIC19.24■□□□□ 0.67
COL2A1P02458 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 EEF1DP4-201ENST00000446006 880 ntBASIC19.24■□□□□ 0.67
COL2A1P02458 AC245100.5-201ENST00000452108 331 ntBASIC19.24■□□□□ 0.67
COL2A1P02458 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC19.24■□□□□ 0.67
COL2A1P02458 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 AC044860.1-202ENST00000559481 777 ntBASIC19.24■□□□□ 0.67
COL2A1P02458 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL2A1P02458 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.24■□□□□ 0.67
COL2A1P02458 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.24■□□□□ 0.67
COL2A1P02458 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL2A1P02458 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC19.23■□□□□ 0.67
COL2A1P02458 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC19.23■□□□□ 0.67
COL2A1P02458 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.23■□□□□ 0.67
COL2A1P02458 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.23■□□□□ 0.67
COL2A1P02458 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.23■□□□□ 0.67
COL2A1P02458 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.23■□□□□ 0.67
COL2A1P02458 HLA-A-202ENST00000376806 1854 ntBASIC19.23■□□□□ 0.67
COL2A1P02458 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL2A1P02458 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.23■□□□□ 0.67
COL2A1P02458 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
COL2A1P02458 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC19.22■□□□□ 0.67
COL2A1P02458 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19.22■□□□□ 0.67
COL2A1P02458 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
COL2A1P02458 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms