Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC024909.3-201ENST00000611513 2257 ntBASIC18.12■□□□□ 0.49
RNF40O75150 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
RNF40O75150 AC132938.6-201ENST00000623828 1655 ntBASIC18.12■□□□□ 0.49
RNF40O75150 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
RNF40O75150 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RNF40O75150 LYSMD4-203ENST00000378904 2122 ntBASIC18.12■□□□□ 0.49
RNF40O75150 RPSAP43-201ENST00000402237 625 ntBASIC18.12■□□□□ 0.49
RNF40O75150 LAGE3P1-201ENST00000425356 484 ntBASIC18.12■□□□□ 0.49
RNF40O75150 GPX1P2-201ENST00000429271 606 ntBASIC18.12■□□□□ 0.49
RNF40O75150 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF40O75150 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.12■□□□□ 0.49
RNF40O75150 BX005266.1-201ENST00000473402 457 ntBASIC18.12■□□□□ 0.49
RNF40O75150 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF40O75150 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
RNF40O75150 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 AC016396.2-201ENST00000562575 1417 ntBASIC18.12■□□□□ 0.49
RNF40O75150 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF40O75150 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 YBX2P1-201ENST00000394192 760 ntBASIC18.11■□□□□ 0.49
RNF40O75150 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 AC007967.2-201ENST00000432613 625 ntBASIC18.11■□□□□ 0.49
RNF40O75150 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.11■□□□□ 0.49
RNF40O75150 AC040169.1-201ENST00000565382 521 ntBASIC18.11■□□□□ 0.49
RNF40O75150 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.11■□□□□ 0.49
RNF40O75150 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
RNF40O75150 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF40O75150 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF40O75150 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.1■□□□□ 0.49
RNF40O75150 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RNF40O75150 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RNF40O75150 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.1■□□□□ 0.49
RNF40O75150 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.1■□□□□ 0.49
RNF40O75150 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 RNA5SP416-201ENST00000516838 111 ntBASIC18.1■□□□□ 0.49
RNF40O75150 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.1■□□□□ 0.49
RNF40O75150 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF40O75150 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RNF40O75150 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 AC046185.3-201ENST00000623228 1824 ntBASIC18.09■□□□□ 0.49
RNF40O75150 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 AL136379.1-201ENST00000623471 2642 ntBASIC18.09■□□□□ 0.49
RNF40O75150 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms