Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 AC021097.1-201ENST00000607902 574 ntBASIC18.04■□□□□ 0.48
HERC6Q8IVU3 AL844908.2-201ENST00000609461 460 ntBASIC18.04■□□□□ 0.48
HERC6Q8IVU3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.04■□□□□ 0.48
HERC6Q8IVU3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.03■□□□□ 0.48
HERC6Q8IVU3 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.03■□□□□ 0.48
HERC6Q8IVU3 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.03■□□□□ 0.48
HERC6Q8IVU3 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.03■□□□□ 0.48
HERC6Q8IVU3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.03■□□□□ 0.48
HERC6Q8IVU3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 HLA-H-201ENST00000383620 1096 ntBASIC18.02■□□□□ 0.48
HERC6Q8IVU3 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AL353705.2-201ENST00000428243 662 ntBASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 KRT18P34-201ENST00000488218 1270 ntBASIC18.02■□□□□ 0.48
HERC6Q8IVU3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 IGHV3-72-202ENST00000621503 303 ntBASIC18.02■□□□□ 0.48
HERC6Q8IVU3 CETN4P-206ENST00000642099 2168 ntBASIC18.02■□□□□ 0.48
HERC6Q8IVU3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HERC6Q8IVU3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HERC6Q8IVU3 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 AC012317.2-201ENST00000623305 2251 ntBASIC18.01■□□□□ 0.47
HERC6Q8IVU3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HERC6Q8IVU3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms