Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SUMO3P55854 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SUMO3P55854 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SUMO3P55854 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.14■□□□□ 0.01
SUMO3P55854 PMS2P7-201ENST00000506558 1336 ntBASIC15.14■□□□□ 0.01
SUMO3P55854 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SUMO3P55854 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SUMO3P55854 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SUMO3P55854 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.13■□□□□ 0.01
SUMO3P55854 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SUMO3P55854 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.13■□□□□ 0.01
SUMO3P55854 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SUMO3P55854 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.13■□□□□ 0.01
SUMO3P55854 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.13■□□□□ 0.01
SUMO3P55854 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.13■□□□□ 0.01
SUMO3P55854 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.13■□□□□ 0.01
SUMO3P55854 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 AL513190.1-201ENST00000621254 727 ntBASIC15.13■□□□□ 0.01
SUMO3P55854 AL161645.1-201ENST00000622716 1255 ntBASIC15.13■□□□□ 0.01
SUMO3P55854 LINC01144-201ENST00000626198 1710 ntBASIC15.13■□□□□ 0.01
SUMO3P55854 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SUMO3P55854 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.13■□□□□ 0.01
SUMO3P55854 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SUMO3P55854 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SUMO3P55854 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 AC092474.2-201ENST00000424288 719 ntBASIC15.12■□□□□ 0.01
SUMO3P55854 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 AC004832.2-201ENST00000426397 482 ntBASIC15.12■□□□□ 0.01
SUMO3P55854 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.12■□□□□ 0.01
SUMO3P55854 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.12■□□□□ 0.01
SUMO3P55854 PGAM5P1-201ENST00000518923 814 ntBASIC15.12■□□□□ 0.01
SUMO3P55854 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.12■□□□□ 0.01
SUMO3P55854 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.12■□□□□ 0.01
SUMO3P55854 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SUMO3P55854 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SUMO3P55854 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
SUMO3P55854 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SUMO3P55854 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.11■□□□□ 0.01
SUMO3P55854 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SUMO3P55854 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SUMO3P55854 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 MIR940-201ENST00000401276 94 ntBASIC15.11■□□□□ 0.01
SUMO3P55854 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.11■□□□□ 0.01
SUMO3P55854 MCCD1P2-201ENST00000423228 335 ntBASIC15.11■□□□□ 0.01
SUMO3P55854 POLD2P1-201ENST00000511220 997 ntBASIC15.11■□□□□ 0.01
SUMO3P55854 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SUMO3P55854 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.11■□□□□ 0.01
SUMO3P55854 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.11■□□□□ 0.01
SUMO3P55854 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SUMO3P55854 AP002472.1-201ENST00000577490 586 ntBASIC15.11■□□□□ 0.01
SUMO3P55854 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.11■□□□□ 0.01
SUMO3P55854 AC092865.6-201ENST00000642101 219 ntBASIC15.11■□□□□ 0.01
SUMO3P55854 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms