Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH13P55290 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH13P55290 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH13P55290 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH13P55290 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH13P55290 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH13P55290 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH13P55290 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH13P55290 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH13P55290 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH13P55290 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH13P55290 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH13P55290 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 HCG4P8-203ENST00000443049 980 ntBASIC16.41■□□□□ 0.22
CDH13P55290 KRT18P31-201ENST00000506277 1292 ntBASIC16.41■□□□□ 0.22
CDH13P55290 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.41■□□□□ 0.22
CDH13P55290 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 AL355877.3-201ENST00000622820 899 ntBASIC16.41■□□□□ 0.22
CDH13P55290 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH13P55290 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH13P55290 SNX33P1-201ENST00000592116 1762 ntBASIC16.41■□□□□ 0.22
CDH13P55290 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH13P55290 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH13P55290 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 TOP3BP1-201ENST00000420768 1380 ntBASIC16.4■□□□□ 0.22
CDH13P55290 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.4■□□□□ 0.22
CDH13P55290 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 PAWRP1-201ENST00000451083 565 ntBASIC16.4■□□□□ 0.22
CDH13P55290 FGFR3P6-201ENST00000457012 610 ntBASIC16.4■□□□□ 0.22
CDH13P55290 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH13P55290 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH13P55290 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.4■□□□□ 0.22
CDH13P55290 MTDHP4-201ENST00000600287 670 ntBASIC16.4■□□□□ 0.22
CDH13P55290 AL121772.3-201ENST00000610840 674 ntBASIC16.4■□□□□ 0.22
CDH13P55290 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.4■□□□□ 0.22
CDH13P55290 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH13P55290 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CDH13P55290 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH13P55290 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH13P55290 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms