Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL12P48061 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL12P48061 KRT8P12-202ENST00000472924 1397 ntBASIC16.51■□□□□ 0.23
CXCL12P48061 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.51■□□□□ 0.23
CXCL12P48061 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CXCL12P48061 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 AC116353.5-201ENST00000638148 1699 ntBASIC16.5■□□□□ 0.23
CXCL12P48061 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.5■□□□□ 0.23
CXCL12P48061 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.5■□□□□ 0.23
CXCL12P48061 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CXCL12P48061 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.5■□□□□ 0.23
CXCL12P48061 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.5■□□□□ 0.23
CXCL12P48061 AC123567.1-201ENST00000548294 1261 ntBASIC16.5■□□□□ 0.23
CXCL12P48061 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.5■□□□□ 0.23
CXCL12P48061 AC026979.3-201ENST00000607315 403 ntBASIC16.5■□□□□ 0.23
CXCL12P48061 AC099568.2-201ENST00000609194 695 ntBASIC16.5■□□□□ 0.23
CXCL12P48061 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.5■□□□□ 0.23
CXCL12P48061 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CXCL12P48061 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
CXCL12P48061 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL12P48061 AC004408.2-201ENST00000623613 2777 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 TUBB8P12-201ENST00000308911 1335 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 TUBB7P-202ENST00000428444 1305 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 TUBB8P7-204ENST00000567960 1332 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CXCL12P48061 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.49■□□□□ 0.23
CXCL12P48061 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.49■□□□□ 0.23
CXCL12P48061 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.49■□□□□ 0.23
CXCL12P48061 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
CXCL12P48061 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.49■□□□□ 0.23
CXCL12P48061 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.49■□□□□ 0.23
CXCL12P48061 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 AC004461.2-201ENST00000629517 803 ntBASIC16.49■□□□□ 0.23
CXCL12P48061 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CXCL12P48061 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL12P48061 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL12P48061 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.48■□□□□ 0.23
CXCL12P48061 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.48■□□□□ 0.23
CXCL12P48061 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.48■□□□□ 0.23
CXCL12P48061 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CXCL12P48061 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL12P48061 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms