Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
BDNFP23560 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 AL139400.1-201ENST00000366220 510 ntBASIC17.61■□□□□ 0.41
BDNFP23560 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.61■□□□□ 0.41
BDNFP23560 AL627223.1-201ENST00000416693 442 ntBASIC17.61■□□□□ 0.41
BDNFP23560 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.61■□□□□ 0.41
BDNFP23560 TSEN15P1-201ENST00000423257 515 ntBASIC17.61■□□□□ 0.41
BDNFP23560 AC023141.5-201ENST00000458585 616 ntBASIC17.61■□□□□ 0.41
BDNFP23560 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.61■□□□□ 0.41
BDNFP23560 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.61■□□□□ 0.41
BDNFP23560 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.61■□□□□ 0.41
BDNFP23560 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.61■□□□□ 0.41
BDNFP23560 KRT8P39-201ENST00000396270 1433 ntBASIC17.61■□□□□ 0.41
BDNFP23560 AC080080.1-201ENST00000625121 2420 ntBASIC17.61■□□□□ 0.41
BDNFP23560 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
BDNFP23560 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.6■□□□□ 0.41
BDNFP23560 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.6■□□□□ 0.41
BDNFP23560 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
BDNFP23560 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.6■□□□□ 0.41
BDNFP23560 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.6■□□□□ 0.41
BDNFP23560 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.6■□□□□ 0.41
BDNFP23560 AC069335.1-201ENST00000489972 472 ntBASIC17.6■□□□□ 0.41
BDNFP23560 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.6■□□□□ 0.41
BDNFP23560 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.6■□□□□ 0.41
BDNFP23560 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
BDNFP23560 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
BDNFP23560 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BDNFP23560 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
BDNFP23560 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.59■□□□□ 0.41
BDNFP23560 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.59■□□□□ 0.41
BDNFP23560 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.59■□□□□ 0.41
BDNFP23560 IGHV3-62-201ENST00000520057 340 ntBASIC17.59■□□□□ 0.41
BDNFP23560 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.59■□□□□ 0.41
BDNFP23560 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.59■□□□□ 0.41
BDNFP23560 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
BDNFP23560 AL603756.1-201ENST00000606511 2163 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms