Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.1□□□□□ -0.15
KCNIP3Q9Y2W7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC098590.1-201ENST00000468126 897 ntBASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 STK19B-204ENST00000512515 211 ntBASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 STK25P1-201ENST00000585406 838 ntBASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 AL049757.1-201ENST00000616842 1596 ntBASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
KCNIP3Q9Y2W7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 AC024909.3-201ENST00000611513 2257 ntBASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
KCNIP3Q9Y2W7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 MMP23A-201ENST00000234610 1017 ntBASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AL355075.4-201ENST00000554988 638 ntBASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 AL021920.2-201ENST00000624828 1351 ntBASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
KCNIP3Q9Y2W7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.07□□□□□ -0.16
KCNIP3Q9Y2W7 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
KCNIP3Q9Y2W7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms