Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 FAM8A6P-201ENST00000407496 1135 ntBASIC14.87□□□□□ -0.03
MMP28Q9H239 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.87□□□□□ -0.03
MMP28Q9H239 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.87□□□□□ -0.03
MMP28Q9H239 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 AL136038.4-201ENST00000603606 1261 ntBASIC14.87□□□□□ -0.03
MMP28Q9H239 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 FAM45BP-202ENST00000592932 1624 ntBASIC14.87□□□□□ -0.03
MMP28Q9H239 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.87□□□□□ -0.03
MMP28Q9H239 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.86□□□□□ -0.03
MMP28Q9H239 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 MTHFR-217ENST00000641820 1569 ntBASIC14.86□□□□□ -0.03
MMP28Q9H239 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.86□□□□□ -0.03
MMP28Q9H239 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.86□□□□□ -0.03
MMP28Q9H239 AL359075.1-203ENST00000462729 1002 ntBASIC14.86□□□□□ -0.03
MMP28Q9H239 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.86□□□□□ -0.03
MMP28Q9H239 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 AC006058.4-201ENST00000624016 1670 ntBASIC14.86□□□□□ -0.03
MMP28Q9H239 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
MMP28Q9H239 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
MMP28Q9H239 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
MMP28Q9H239 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.86□□□□□ -0.03
MMP28Q9H239 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MMP28Q9H239 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.85□□□□□ -0.03
MMP28Q9H239 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.85□□□□□ -0.03
MMP28Q9H239 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
MMP28Q9H239 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MMP28Q9H239 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms