Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 AC055717.3-201ENST00000622967 595 ntBASIC18.17■□□□□ 0.5
RNF40O75150 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF40O75150 AC107918.4-202ENST00000641623 219 ntBASIC18.17■□□□□ 0.5
RNF40O75150 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 TSPY26P-202ENST00000565928 3884 ntBASIC18.17■□□□□ 0.5
RNF40O75150 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF40O75150 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
RNF40O75150 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF40O75150 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 AP002414.3-201ENST00000589352 1468 ntBASIC18.16■□□□□ 0.5
RNF40O75150 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RNF40O75150 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF40O75150 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 AC105339.3-201ENST00000560043 636 ntBASIC18.16■□□□□ 0.5
RNF40O75150 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.16■□□□□ 0.5
RNF40O75150 AC010327.4-202ENST00000591484 748 ntBASIC18.16■□□□□ 0.5
RNF40O75150 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 Z99916.3-201ENST00000623422 1080 ntBASIC18.16■□□□□ 0.5
RNF40O75150 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF40O75150 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF40O75150 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
RNF40O75150 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RNF40O75150 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RNF40O75150 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
RNF40O75150 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 UPF3AP3-201ENST00000420996 769 ntBASIC18.15■□□□□ 0.5
RNF40O75150 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.15■□□□□ 0.5
RNF40O75150 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.15■□□□□ 0.5
RNF40O75150 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RNF40O75150 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF40O75150 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF40O75150 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF40O75150 AP000867.4-201ENST00000641616 219 ntBASIC18.15■□□□□ 0.5
RNF40O75150 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms