Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.36■□□□□ 0.21
SDC3O75056 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 AF228730.6-201ENST00000641497 218 ntBASIC16.36■□□□□ 0.21
SDC3O75056 AC084121.3-201ENST00000641716 218 ntBASIC16.36■□□□□ 0.21
SDC3O75056 AC105233.6-201ENST00000642093 218 ntBASIC16.36■□□□□ 0.21
SDC3O75056 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
SDC3O75056 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 AC116353.5-201ENST00000638148 1699 ntBASIC16.36■□□□□ 0.21
SDC3O75056 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 MIR346-201ENST00000362234 95 ntBASIC16.35■□□□□ 0.21
SDC3O75056 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.35■□□□□ 0.21
SDC3O75056 MIR3909-201ENST00000579518 119 ntBASIC16.35■□□□□ 0.21
SDC3O75056 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.35■□□□□ 0.21
SDC3O75056 AL158211.3-201ENST00000607385 239 ntBASIC16.35■□□□□ 0.21
SDC3O75056 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SDC3O75056 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.35■□□□□ 0.21
SDC3O75056 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SDC3O75056 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SDC3O75056 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.34■□□□□ 0.21
SDC3O75056 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.34■□□□□ 0.21
SDC3O75056 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.34■□□□□ 0.21
SDC3O75056 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.34■□□□□ 0.21
SDC3O75056 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 LINC02560-201ENST00000596379 459 ntBASIC16.34■□□□□ 0.21
SDC3O75056 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SDC3O75056 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SDC3O75056 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SDC3O75056 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.34■□□□□ 0.21
SDC3O75056 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.34■□□□□ 0.21
SDC3O75056 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms