Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA1P49639 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXA1P49639 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA1P49639 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.01□□□□□ -0.17
HOXA1P49639 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 IGHGP-201ENST00000390555 1178 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXA1P49639 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA1P49639 SPDYE15P-201ENST00000424157 909 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXA1P49639 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA1P49639 SLC25A3P1-201ENST00000443844 931 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 MTCL1P1-201ENST00000446207 792 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 COX11P1-201ENST00000489116 835 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 AC005915.1-201ENST00000624912 2018 ntBASIC14.01□□□□□ -0.17
HOXA1P49639 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA1P49639 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA1P49639 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA1P49639 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14□□□□□ -0.17
HOXA1P49639 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 AL365209.1-201ENST00000624418 6473 ntBASIC14□□□□□ -0.17
HOXA1P49639 TBC1D3P5-201ENST00000579401 1545 ntBASIC14□□□□□ -0.17
HOXA1P49639 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 AL353692.3-201ENST00000407031 1396 ntBASIC14□□□□□ -0.17
HOXA1P49639 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14□□□□□ -0.17
HOXA1P49639 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
HOXA1P49639 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14□□□□□ -0.17
HOXA1P49639 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 HLA-F-220ENST00000434407 884 ntBASIC14□□□□□ -0.17
HOXA1P49639 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14□□□□□ -0.17
HOXA1P49639 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 TK1-204ENST00000590430 683 ntTSL 3 BASIC14□□□□□ -0.17
HOXA1P49639 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
HOXA1P49639 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14□□□□□ -0.17
HOXA1P49639 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXA1P49639 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms