Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.72■□□□□ 0.43
LHX1P48742 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LHX1P48742 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LHX1P48742 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.72■□□□□ 0.43
LHX1P48742 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.72■□□□□ 0.43
LHX1P48742 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.72■□□□□ 0.43
LHX1P48742 IGHV3-62-201ENST00000520057 340 ntBASIC17.72■□□□□ 0.43
LHX1P48742 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.72■□□□□ 0.43
LHX1P48742 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.72■□□□□ 0.43
LHX1P48742 AC027612.4-201ENST00000605371 583 ntBASIC17.72■□□□□ 0.43
LHX1P48742 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.72■□□□□ 0.43
LHX1P48742 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.72■□□□□ 0.43
LHX1P48742 AC005915.1-201ENST00000624912 2018 ntBASIC17.72■□□□□ 0.43
LHX1P48742 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.72■□□□□ 0.43
LHX1P48742 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.72■□□□□ 0.43
LHX1P48742 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LHX1P48742 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LHX1P48742 KRT18P28-201ENST00000453838 1332 ntBASIC17.72■□□□□ 0.43
LHX1P48742 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LHX1P48742 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.71■□□□□ 0.43
LHX1P48742 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.71■□□□□ 0.43
LHX1P48742 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LHX1P48742 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.71■□□□□ 0.43
LHX1P48742 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 AL627223.1-201ENST00000416693 442 ntBASIC17.71■□□□□ 0.43
LHX1P48742 AC005237.2-201ENST00000434368 219 ntBASIC17.71■□□□□ 0.43
LHX1P48742 SPCS2P4-201ENST00000436160 681 ntBASIC17.71■□□□□ 0.43
LHX1P48742 AC023141.5-201ENST00000458585 616 ntBASIC17.71■□□□□ 0.43
LHX1P48742 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.71■□□□□ 0.43
LHX1P48742 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.71■□□□□ 0.43
LHX1P48742 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
LHX1P48742 AC008267.7-201ENST00000624570 1194 ntBASIC17.71■□□□□ 0.43
LHX1P48742 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.71■□□□□ 0.43
LHX1P48742 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.71■□□□□ 0.43
LHX1P48742 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LHX1P48742 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LHX1P48742 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX1P48742 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LHX1P48742 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.71■□□□□ 0.42
LHX1P48742 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
LHX1P48742 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.71■□□□□ 0.42
LHX1P48742 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
LHX1P48742 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LHX1P48742 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LHX1P48742 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.7■□□□□ 0.42
LHX1P48742 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 HLA-J-202ENST00000469281 1241 ntBASIC17.7■□□□□ 0.42
LHX1P48742 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX1P48742 LINC01225-203ENST00000563550 1244 ntBASIC17.7■□□□□ 0.42
LHX1P48742 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.7■□□□□ 0.42
LHX1P48742 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX1P48742 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LHX1P48742 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX1P48742 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms