Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CTDP1Q9Y5B0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.39■□□□□ 0.69
CTDP1Q9Y5B0 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTDP1Q9Y5B0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTDP1Q9Y5B0 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.39■□□□□ 0.69
CTDP1Q9Y5B0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 FZD10-202ENST00000539839 3282 ntBASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 LINC02084-201ENST00000606069 1096 ntBASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.38■□□□□ 0.69
CTDP1Q9Y5B0 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 FAM8A3P-201ENST00000427218 844 ntBASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CYP2A7P1-201ENST00000595391 815 ntBASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTDP1Q9Y5B0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 FAM58DP-201ENST00000428076 619 ntBASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 MIR3909-201ENST00000579518 119 ntBASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms