Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 TPRX2P-201ENST00000535362 881 ntBASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 AC123567.1-201ENST00000548294 1261 ntBASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 AL583810.1-201ENST00000553344 1045 ntBASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 LINC01451-201ENST00000623792 534 ntBASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 AC131009.4-201ENST00000624048 1740 ntBASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZC3H4Q9UPT8 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 AL355994.2-201ENST00000447882 704 ntBASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 RRP7BP-205ENST00000566851 833 ntBASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
ZC3H4Q9UPT8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ZC3H4Q9UPT8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
ZC3H4Q9UPT8 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ZC3H4Q9UPT8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ZC3H4Q9UPT8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 ELK2AP-201ENST00000392510 1007 ntBASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC044860.1-202ENST00000559481 777 ntBASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 AC067852.2-201ENST00000590513 2313 ntBASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZC3H4Q9UPT8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
ZC3H4Q9UPT8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms