Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 AL805961.1-202ENST00000641562 540 ntBASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 KRT8P39-201ENST00000396270 1433 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 SAPCD2P3-201ENST00000455031 850 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 SLC25A6P2-201ENST00000497974 877 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 AF238378.1-201ENST00000526806 358 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 AC008741.2-201ENST00000612792 3115 ntBASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMCH1Q9UPQ0 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 ELK2BP-201ENST00000415014 1224 ntBASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 AC091167.2-201ENST00000579581 588 ntBASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMCH1Q9UPQ0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms