Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AL133373.2-201ENST00000623187 2828 ntBASIC17.23■□□□□ 0.35
TDP1Q9NUW8 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 AL512638.1-201ENST00000457493 794 ntBASIC17.22■□□□□ 0.35
TDP1Q9NUW8 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 AC018529.1-201ENST00000613063 361 ntBASIC17.22■□□□□ 0.35
TDP1Q9NUW8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 AP3S2-216ENST00000617003 1561 ntBASIC17.22■□□□□ 0.35
TDP1Q9NUW8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TDP1Q9NUW8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AC092068.3-201ENST00000587894 2016 ntBASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AL671710.1-201ENST00000610245 2349 ntBASIC17.21■□□□□ 0.35
TDP1Q9NUW8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 TSPY16P-201ENST00000449843 468 ntBASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 PRYP6-201ENST00000514804 343 ntBASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.21■□□□□ 0.35
TDP1Q9NUW8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
TDP1Q9NUW8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
TDP1Q9NUW8 LETM1P2-201ENST00000597330 2178 ntBASIC17.21■□□□□ 0.34
TDP1Q9NUW8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 PP12613-201ENST00000424958 2230 ntBASIC17.2■□□□□ 0.34
TDP1Q9NUW8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms