Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SDC3O75056 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SDC3O75056 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 MIR661-201ENST00000384842 89 ntBASIC16.4■□□□□ 0.22
SDC3O75056 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 AC002472.2-201ENST00000442739 958 ntBASIC16.4■□□□□ 0.22
SDC3O75056 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC3O75056 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC3O75056 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC3O75056 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.4■□□□□ 0.22
SDC3O75056 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.4■□□□□ 0.22
SDC3O75056 AL138918.1-201ENST00000568306 659 ntBASIC16.4■□□□□ 0.22
SDC3O75056 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
SDC3O75056 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 LINC00896-202ENST00000609602 2128 ntBASIC16.4■□□□□ 0.22
SDC3O75056 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.4■□□□□ 0.22
SDC3O75056 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDC3O75056 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDC3O75056 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
SDC3O75056 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SDC3O75056 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 AC069120.2-201ENST00000524091 540 ntBASIC16.39■□□□□ 0.21
SDC3O75056 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.39■□□□□ 0.21
SDC3O75056 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.39■□□□□ 0.21
SDC3O75056 RN7SL204P-201ENST00000582831 262 ntBASIC16.39■□□□□ 0.21
SDC3O75056 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC3O75056 AC084121.4-201ENST00000641598 221 ntBASIC16.39■□□□□ 0.21
SDC3O75056 AF228730.8-201ENST00000642140 221 ntBASIC16.39■□□□□ 0.21
SDC3O75056 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SDC3O75056 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.39■□□□□ 0.21
SDC3O75056 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 FRMD8P1-201ENST00000440433 1524 ntBASIC16.39■□□□□ 0.21
SDC3O75056 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 NOC2LP2-201ENST00000407594 1944 ntBASIC16.39■□□□□ 0.21
SDC3O75056 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SDC3O75056 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDC3O75056 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SDC3O75056 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 AC016396.2-201ENST00000562575 1417 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms