Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 AL136379.1-201ENST00000623471 2642 ntBASIC13.6□□□□□ -0.23
HMGB3O15347 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 DMBT1P1-203ENST00000636837 4628 ntBASIC13.59□□□□□ -0.23
HMGB3O15347 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 KRT18P65-201ENST00000439811 1286 ntBASIC13.59□□□□□ -0.23
HMGB3O15347 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 ADM-205ENST00000528544 586 ntTSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.59□□□□□ -0.23
HMGB3O15347 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.59□□□□□ -0.23
HMGB3O15347 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.59□□□□□ -0.23
HMGB3O15347 FAM197Y4-202ENST00000622692 608 ntBASIC13.59□□□□□ -0.23
HMGB3O15347 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HMGB3O15347 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
HMGB3O15347 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
HMGB3O15347 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HMGB3O15347 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
HMGB3O15347 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 AC005052.1-201ENST00000625181 2492 ntBASIC13.58□□□□□ -0.23
HMGB3O15347 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.58□□□□□ -0.23
HMGB3O15347 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HMGB3O15347 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.58□□□□□ -0.24
HMGB3O15347 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 DLGAP2-214ENST00000612087 10088 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
HMGB3O15347 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.58□□□□□ -0.24
HMGB3O15347 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HMGB3O15347 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.58□□□□□ -0.24
HMGB3O15347 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.58□□□□□ -0.24
HMGB3O15347 SPIB-206ENST00000596074 847 ntTSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC13.58□□□□□ -0.24
HMGB3O15347 REXO1L10P-201ENST00000615707 1290 ntBASIC13.58□□□□□ -0.24
HMGB3O15347 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC13.58□□□□□ -0.24
HMGB3O15347 REXO1L12P-201ENST00000622156 912 ntBASIC13.58□□□□□ -0.24
HMGB3O15347 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
HMGB3O15347 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 ALOX12P2-203ENST00000570921 1945 ntBASIC13.58□□□□□ -0.24
HMGB3O15347 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.58□□□□□ -0.24
HMGB3O15347 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms