Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 SLC25A6P2-201ENST00000497974 877 ntBASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 AC139887.3-201ENST00000568585 713 ntBASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 MPDU1-223ENST00000582151 728 ntBASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 AC025062.2-201ENST00000605477 670 ntBASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
TCRBV7S3A2A0A539 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 GGT4P-201ENST00000623672 1708 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 AL031731.1-201ENST00000642131 2094 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 ELK2BP-201ENST00000415014 1224 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 AL121772.3-201ENST00000610840 674 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 REXO1L6P-202ENST00000619970 1078 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 MTHFR-217ENST00000641820 1569 ntBASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TCRBV7S3A2A0A539 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.09■□□□□ 0.33
TCRBV7S3A2A0A539 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms