Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPAP1Q9BWH6 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 AC002056.1-201ENST00000395613 760 ntBASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPAP1Q9BWH6 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 AC140658.5-201ENST00000438532 169 ntBASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPAP1Q9BWH6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 AL627223.1-201ENST00000416693 442 ntBASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 AL645728.2-201ENST00000641974 660 ntBASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms