Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PKP4Q99569 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.4■□□□□ 0.22
PKP4Q99569 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.4■□□□□ 0.22
PKP4Q99569 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PKP4Q99569 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PKP4Q99569 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PKP4Q99569 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.22
PKP4Q99569 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PKP4Q99569 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PKP4Q99569 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.39■□□□□ 0.21
PKP4Q99569 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PKP4Q99569 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 IGLL3P-201ENST00000412472 434 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.39■□□□□ 0.21
PKP4Q99569 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.39■□□□□ 0.21
PKP4Q99569 HCG4B-203ENST00000450128 991 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 CXCL1P1-201ENST00000502804 216 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.39■□□□□ 0.21
PKP4Q99569 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.39■□□□□ 0.21
PKP4Q99569 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.39■□□□□ 0.21
PKP4Q99569 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.39■□□□□ 0.21
PKP4Q99569 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.39■□□□□ 0.21
PKP4Q99569 AC005412.3-201ENST00000580309 715 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.39■□□□□ 0.21
PKP4Q99569 ACTL9-202ENST00000612068 1252 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 AL353732.1-201ENST00000569618 1459 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PKP4Q99569 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
PKP4Q99569 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.39■□□□□ 0.21
PKP4Q99569 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 AC131009.4-201ENST00000624048 1740 ntBASIC16.39■□□□□ 0.21
PKP4Q99569 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.39■□□□□ 0.21
PKP4Q99569 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PKP4Q99569 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
PKP4Q99569 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PKP4Q99569 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
PKP4Q99569 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.38■□□□□ 0.21
PKP4Q99569 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.38■□□□□ 0.21
PKP4Q99569 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.38■□□□□ 0.21
PKP4Q99569 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.38■□□□□ 0.21
PKP4Q99569 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
PKP4Q99569 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PKP4Q99569 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.38■□□□□ 0.21
PKP4Q99569 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKP4Q99569 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PKP4Q99569 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PKP4Q99569 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKP4Q99569 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.37■□□□□ 0.21
PKP4Q99569 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PKP4Q99569 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.37■□□□□ 0.21
PKP4Q99569 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PKP4Q99569 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.37■□□□□ 0.21
PKP4Q99569 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms