Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRIM43Q96BQ3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM43Q96BQ3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM43Q96BQ3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 MEP1AP4-201ENST00000423244 1087 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 ACTBP11-201ENST00000436287 1126 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AL033527.5-202ENST00000641632 1098 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AL138781.2-201ENST00000617896 1843 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC093525.9-201ENST00000624961 1746 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 AC133963.1-201ENST00000504166 1679 ntBASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM43Q96BQ3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM43Q96BQ3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 SERBP1P3-201ENST00000459980 809 ntBASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 SDHAP3-202ENST00000515467 728 ntBASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AC104989.1-201ENST00000519711 778 ntBASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AC093726.1-201ENST00000608064 963 ntBASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM43Q96BQ3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms