Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL512361.1-201ENST00000554200 418 ntBASIC17.76■□□□□ 0.43
COL4A4P53420 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.76■□□□□ 0.43
COL4A4P53420 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A4P53420 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A4P53420 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL4A4P53420 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
COL4A4P53420 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
COL4A4P53420 AC135586.1-201ENST00000539323 574 ntBASIC17.75■□□□□ 0.43
COL4A4P53420 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL4A4P53420 SPTSSB-204ENST00000617024 1292 ntBASIC17.75■□□□□ 0.43
COL4A4P53420 AC131009.4-201ENST00000624048 1740 ntBASIC17.75■□□□□ 0.43
COL4A4P53420 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL4A4P53420 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL4A4P53420 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A4P53420 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL4A4P53420 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A4P53420 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A4P53420 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A4P53420 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 AC098614.1-201ENST00000368528 745 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A4P53420 RPL37AP1-201ENST00000412502 279 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 KRT17P8-201ENST00000540749 863 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
COL4A4P53420 AL162274.1-201ENST00000617191 1098 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL4A4P53420 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL4A4P53420 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.74■□□□□ 0.43
COL4A4P53420 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.74■□□□□ 0.43
COL4A4P53420 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL4A4P53420 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A4P53420 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A4P53420 KRT223P-202ENST00000449164 1292 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 RAB43P1-201ENST00000561790 589 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL4A4P53420 MIR6799-201ENST00000620297 69 ntBASIC17.74■□□□□ 0.43
COL4A4P53420 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A4P53420 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A4P53420 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
COL4A4P53420 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A4P53420 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL4A4P53420 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A4P53420 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.73■□□□□ 0.43
COL4A4P53420 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A4P53420 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 AL133215.2-201ENST00000609242 977 ntBASIC17.73■□□□□ 0.43
COL4A4P53420 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.73■□□□□ 0.43
COL4A4P53420 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A4P53420 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 AC007541.1-201ENST00000570282 1469 ntBASIC17.73■□□□□ 0.43
COL4A4P53420 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A4P53420 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
COL4A4P53420 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL4A4P53420 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms